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IDCP970_00620 TypeCDS
From184185 nt length603
To184787 aa length200
Gene pI9.8
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)21581
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_898 putative RNA polymerase ECF-subfamily sigma factor2141.0e-71
coelSCO0866 probable ECF-family sigma factor2097.0e-70
sgrSGR_6228 putative RNA polymerase ECF-subfamily sigma factor2013.0e-66

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4138-18850.31.4e-13

Sigma70_r21Sigma-70 region 241-10749.82.2e-13

Sigma70_r41Sigma-70, region 4142-18925.47.6e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098246669.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 7632.3e-101
WP_150187846.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 6591.8e-85
WP_150175226.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 6591.9e-85
WP_150213742.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 6582.2e-85
WP_055569020.1 sigma-70 family RNA polymerase sigma factor [Streptomyces at... 6531.2e-84
WP_030775799.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6252.7e-80
WP_055528946.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 6234.4e-80
WP_069885495.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 6174.3e-79
WP_055697608.1 sigma-70 family RNA polymerase sigma factor [Streptomyces si... 6122.2e-78
WP_062772620.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 5751.0e-72

PSORT result

LocalizationCertaintyPSORT said
Not Clear