-- | --

IDCP970_06270 TypeCDS
From1630403 nt length837
To1629567 aa length278
Gene pI6.18
DefinitionSigB/SigF/SigG family RNA polymerase sigma factor M.W (Da)31311
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1873 putative RNA polymerase sigma factor4451.0e-160
coelSCO6520 putative RNA polymerase sigma factor4263.0e-153
sgrSGR_6446 putative RNA polymerase sigma factor3374.0e-118

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4223-27171.14e-20

Sigma70_r21Sigma-70 region 257-12457.77.5e-16

Sigma70_r4_21Sigma-70, region 4223-26439.72.9e-10

Sigma70_r31Sigma-70 region 3136-18833.63.1e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098245928.1 RNA polymerase sigma factor SigF [Streptomyces formicae] >gb... 12383.7e-171
WP_127910489.1 RNA polymerase sigma factor SigF [Streptomyces huasconensis] 12174.3e-168
WP_125516219.1 RNA polymerase sigma factor SigF [Streptomyces sp. WAC 01529... 12141.7e-167
WP_150174189.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 12062.8e-166
WP_150215135.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 12037.7e-166
WP_055567546.1 RNA polymerase sigma factor SigF [Streptomyces atriruber] 12011.4e-165
WP_150187135.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 12002.0e-165
WP_030789760.1 RNA polymerase sigma factor SigF [Streptomyces sp. NRRL S-92... 11993.1e-165
WP_055528604.1 RNA polymerase sigma factor SigF [Streptomyces alboniger] >g... 11907.7e-164
WP_055700524.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11377.0e-156

PSORT result

LocalizationCertaintyPSORT said
Not Clear