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IDCP970_14450 TypeCDS
From3549188 nt length849
To3548340 aa length282
Gene pI5.47
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)30968
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3038 putative RNA polymerase ECF-subfamily sigma factor4323.0e-156
coelSCO5216 sigR RNA polymerase sigma factor4375.0e-158
sgrSGR_2306 putative RNA polymerase ECF-subfamily sigma factor3872.0e-138

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 298-16164.94.4e-18

Sigma70_r4_21Sigma-70, region 4203-25351.36.7e-14

Sigma70_r41Sigma-70, region 4206-25434.01.5e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244681.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 14570.0e+00
WP_150172062.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14320.0e+00
WP_079107753.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14320.0e+00
WP_076684625.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14280.0e+00
WP_125515016.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14050.0e+00
WP_079036741.1 sigma-70 family RNA polymerase sigma factor [Streptomyces lu... 14030.0e+00
WP_078593986.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14030.0e+00
QCX78999.1 ECF RNA polymerase sigma factor SigR [Streptomyces sp. YIM 121038... 13480.0e+00
WP_078619429.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 13480.0e+00
WP_164322536.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 13430.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear