-- | --

IDCP970_16100 TypeCDS
From3914894 nt length774
To3914121 aa length257
Gene pI6.7
DefinitionSigE family RNA polymerase sigma factor M.W (Da)28473
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3351 putative RNA polymerase ECF-subfamily sigma factor3752.0e-134
coelSCO4908 putative RNA polymerase sigma factor (fragment)3535.0e-126
sgrSGR_2634 putative RNA polymerase ECF-subfamily sigma factor3473.0e-123

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4185-23653.41.5e-14

Sigma70_r41Sigma-70, region 4189-23848.25.5e-13

Sigma70_r21Sigma-70 region 295-15844.21.2e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244420.1 SigE family RNA polymerase sigma factor [Streptomyces formic... 12664.1e-176
WP_125514660.1 SigE family RNA polymerase sigma factor [Streptomyces sp. WA... 11812.6e-163
WP_127909652.1 SigE family RNA polymerase sigma factor [Streptomyces huasco... 11787.2e-163
WP_150216538.1 SigE family RNA polymerase sigma factor [Streptomyces venezu... 11761.5e-162
WP_150171412.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 11751.7e-162
WP_055568672.1 SigE family RNA polymerase sigma factor [Streptomyces atriru... 11752.0e-162
WP_150185888.1 SigE family RNA polymerase sigma factor [Streptomyces venezu... 11691.7e-161
WP_067438449.1 SigE family RNA polymerase sigma factor [Streptomyces lincol... 11692.3e-161
WP_078593851.1 SigE family RNA polymerase sigma factor [Streptomyces sp. NR... 11657.7e-161
WP_150512751.1 SigE family RNA polymerase sigma factor [Streptomyces specta... 11651.1e-160

PSORT result

LocalizationCertaintyPSORT said
Not Clear