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IDCP970_16370 TypeCDS
From3968277 nt length666
To3967612 aa length221
Gene pI6.35
DefinitionRNA polymerase sigma factor M.W (Da)23413
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3385 putative RNA polymerase ECF-subfamily sigma factor3643.0e-130
coelSCO4866 putative ECF sigma factor3651.0e-130
sgrSGR_2673 putative RNA polymerase ECF-subfamily sigma factor3216.0e-113

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 227-9358.34.8e-16

Sigma70_r4_21Sigma-70, region 4125-17643.51.9e-11

Sigma70_ECF1ECF sigma factor7-16123.73.8e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244376.1 RNA polymerase sigma factor [Streptomyces formicae] >gb 10859.6e-150
WP_055699802.1 MULTISPECIES: RNA polymerase sigma factor [Streptomyces] 10608.5e-146
WP_150216571.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 10581.5e-145
WP_125514628.1 RNA polymerase sigma factor [Streptomyces sp. WAC 01529] >gb... 10537.2e-145
WP_150185858.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 10441.9e-143
WP_055569910.1 RNA polymerase sigma factor [Streptomyces atriruber] 10391.1e-142
WP_161236166.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 10391.2e-142
WP_030779198.1 RNA polymerase sigma factor [Streptomyces sp. NRRL S-920] 10381.9e-142
WP_150171343.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 10347.0e-142
WP_055536062.1 RNA polymerase sigma factor [Streptomyces alboniger] >gb 10312.2e-141

PSORT result

LocalizationCertaintyPSORT said
Not Clear