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IDCP970_17210 TypeCDS
From4157522 nt length1023
To4156500 aa length340
Gene pI4.4
DefinitionDNA-directed RNA polymerase subunit alpha M.W (Da)36799
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4953 RNA polymerase alpha subunit6770.0e+00
coelSCO4729 DNA-directed RNA polymerase alpha chain6770.0e+00
sgrSGR_2807 RNA polymerase alpha subunit6770.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_A_CTD1Bacterial RNA polymerase, alpha chain C terminal domain245-30289.87.1e-26

RNA_pol_A_bac1RNA polymerase Rpb3/RpoA insert domain57-14985.82.5e-24

RNA_pol_L1RNA polymerase Rpb3/Rpb11 dimerisation domain24-21864.27.3e-18

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_016645160.1 MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Str... 15080.0e+00
WP_147995221.1 DNA-directed RNA polymerase subunit alpha [Streptomyces sp. ... 15050.0e+00
WP_093905258.1 DNA-directed RNA polymerase subunit alpha [Streptomyces sp. ... 15040.0e+00
WP_093747976.1 MULTISPECIES: DNA-directed RNA polymerase subunit alpha [Str... 14990.0e+00
WP_168499966.1 DNA-directed RNA polymerase subunit alpha [Streptomyces sp. ... 14980.0e+00
WP_019526960.1 MULTISPECIES: DNA-directed RNA polymerase subunit alpha [unc... 14970.0e+00
WP_077971828.1 DNA-directed RNA polymerase subunit alpha [Streptomyces tsuk... 14960.0e+00
WP_167991148.1 DNA-directed RNA polymerase subunit alpha [Streptomyces sp. ... 14960.0e+00
WP_167794334.1 DNA-directed RNA polymerase subunit alpha, partial [Streptom... 14960.0e+00
WP_055470914.1 DNA-directed RNA polymerase subunit alpha [Streptomyces path... 14950.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear