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IDCP970_17420 TypeCDS
From4188583 nt length3900
To4184684 aa length1299
Gene pI7.22
DefinitionDNA-directed RNA polymerase subunit beta' M.W (Da)144590
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4915 RNA polymerase beta prime subunit25810.0e+00
coelSCO4655 DNA-directed RNA polymerase beta' chain (fragment)25590.0e+00
sgrSGR_2868 putative RNA polymerase beta prime subunit25730.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb1_11RNA polymerase Rpb1, domain 17-417275.94.4e-82

RNA_pol_Rpb1_51RNA polymerase Rpb1, domain 5838-1199230.52.4e-68

RNA_pol_Rpb1_22RNA polymerase Rpb1, domain 2419-480, 468-560133.21e-38

RNA_pol_Rpb1_31RNA polymerase Rpb1, domain 3564-73177.21.3e-21

RNA_pol_Rpb1_41RNA polymerase Rpb1, domain 4760-82453.32.3e-14

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098244239.1 DNA-directed RNA polymerase subunit beta' [Streptomyces form... 67950.0e+00
WP_055698218.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Str... 67680.0e+00
WP_135331368.1 DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ... 67660.0e+00
WP_150171071.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Str... 67200.0e+00
WP_150185735.1 DNA-directed RNA polymerase subunit beta' [Streptomyces vene... 67200.0e+00
WP_125514465.1 DNA-directed RNA polymerase subunit beta' [Streptomyces sp. ... 67200.0e+00
WP_150512581.1 DNA-directed RNA polymerase subunit beta' [Streptomyces spec... 67190.0e+00
WP_150216773.1 DNA-directed RNA polymerase subunit beta' [Streptomyces vene... 67170.0e+00
WP_062780306.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Str... 67160.0e+00
WP_138961311.1 MULTISPECIES: DNA-directed RNA polymerase subunit beta' [unc... 67140.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear