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IDCP970_21480 TypeCDS
From5044369 nt length735
To5043635 aa length244
GenesigM pI6.91
DefinitionRNA polymerase sigma factor SigM M.W (Da)26216
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4303 putative RNA polymerase ECF-subfamily sigma factor4005.0e-144
coelSCO3892 putative RNA polymerase sigma factor3825.0e-137
sgrSGR_3687 putative RNA polymerase ECF-subfamily sigma factor3482.0e-123

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9662.81.9e-17

Sigma70_r4_21Sigma-70, region 4129-18154.38e-15

Sigma70_r41Sigma-70, region 4134-18132.73.9e-08

Sigma70_ECF1ECF sigma factor14-18028.21.5e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098243627.1 RNA polymerase sigma factor SigM [Streptomyces formicae] >gb... 11983.9e-166
WP_079143535.1 RNA polymerase sigma factor SigM [Streptomyces luteocolor] 11715.5e-162
WP_079036775.1 RNA polymerase sigma factor SigM [Streptomyces silaceus] 11654.7e-161
WP_135332068.1 RNA polymerase sigma factor SigM [Streptomyces sp. MZ04] >lc... 11455.0e-158
WP_079074730.1 RNA polymerase sigma factor SigM [Streptomyces atriruber] 11378.6e-157
WP_150477090.1 RNA polymerase sigma factor SigM [Streptomyces alboniger] >g... 11291.8e-155
WP_078593915.1 RNA polymerase sigma factor SigM [Streptomyces sp. NRRL S-92... 11204.5e-154
WP_161234855.1 MULTISPECIES: RNA polymerase sigma factor SigM [unclassified... 11151.9e-153
WP_150185093.1 RNA polymerase sigma factor SigM [Streptomyces venezuelae] >... 11143.2e-153
WP_150169920.1 RNA polymerase sigma factor SigM [Streptomyces venezuelae] >... 11133.5e-153

PSORT result

LocalizationCertaintyPSORT said
Not Clear