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IDCP970_26950 TypeCDS
From6250013 nt length582
To6250594 aa length193
Gene pI9.82
Definitionsigma-70 family RNA polymerase sigma factor M.W (Da)21672
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5123 putative RNA polymerase ECF-subfamily sigma factor3386.0e-121
coelSCO2954 putative RNA polymerase sigma factor3535.0e-127
sgrSGR_718 putative RNA polymerase ECF-subfamily sigma factor1552.0e-48

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 235-10357.86.9e-16

Sigma70_r41Sigma-70, region 4135-18349.52.2e-13

Sigma70_r4_21Sigma-70, region 4131-18136.04e-09

Sigma70_ECF1ECF sigma factor87-17827.03.6e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098242836.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fo... 9661.5e-132
WP_078594902.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9411.1e-128
WP_125513073.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9392.0e-128
WP_076685892.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9341.3e-127
WP_121402637.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9297.6e-127
WP_062776165.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 9271.7e-126
WP_100593923.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 9262.5e-126
WP_003990602.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9253.0e-126
WP_150218265.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ve... 9253.1e-126
WP_078947779.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 9221.1e-125

PSORT result

LocalizationCertaintyPSORT said
Not Clear