-- | --

IDCP970_33190 TypeCDS
From7636041 nt length522
To7636562 aa length173
Gene pI7.36
DefinitionSigE family RNA polymerase sigma factor M.W (Da)19133
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4427 putative RNA polymerase ECF-subfamily sigma factor2642.0e-92
coelSCO3709 putative ECF sigma factor1854.0e-61
sgrSGR_3223 putative RNA polymerase ECF-subfamily sigma factor1647.0e-53

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 499-15056.71.4e-15

Sigma70_r21Sigma-70 region 210-7651.18.5e-14

Sigma70_r41Sigma-70, region 4103-15031.11.2e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_098241808.1 SigE family RNA polymerase sigma factor [Streptomyces formic... 5578.6e-71
WP_055566774.1 SigE family RNA polymerase sigma factor [Streptomyces atriru... 5292.5e-66
WP_150219281.1 SigE family RNA polymerase sigma factor [Streptomyces venezu... 5275.2e-66
WP_150166525.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 5259.1e-66
WP_150183490.1 SigE family RNA polymerase sigma factor [Streptomyces venezu... 5162.4e-64
WP_055700351.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 5022.5e-62
WP_142214367.1 SigE family RNA polymerase sigma factor [Streptomyces sp. SL... 4631.2e-56
4633.0e-56
WP_152773570.1 SigE family RNA polymerase sigma factor [Streptomyces spongi... 4552.9e-55
WP_147998959.1 SigE family RNA polymerase sigma factor [Streptomyces sp. uw... 4526.5e-55

PSORT result

LocalizationCertaintyPSORT said
Not Clear