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IDSACE_0128 TypeCDS
From155413 nt length582
To155994 aa length193
Gene pI8.26
DefinitionRNA polymerase ECF sigma factor M.W (Da)21214
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4207 putative RNA polymerase ECF-subfamily sigma factor1093.0e-25
coelSCO4005 putative RNA polymerase sigma factor971.0e-21
sgrSGR_3603 putative RNA polymerase ECF-subfamily sigma factor1153.0e-27
scabSCAB47081 putative RNA polymerase sigma factor1078.0e-25
saceSCAB47081 putative RNA polymerase sigma factor1078.0e-25

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4130-18062.61.8e-17

Sigma70_r41Sigma-70, region 4133-18260.57.2e-17

Sigma70_r21Sigma-70 region 243-10628.39.9e-07

Sigma70_ECF1ECF sigma factor108-17328.31.3e-06

GerE1Bacterial regulatory proteins, luxR family137-17923.13.5e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_011872951.1 SigE family RNA polymerase sigma factor [Saccharopolyspora e... 9409.4e-129
WP_009949284.1 SigE family RNA polymerase sigma factor [Saccharopolyspora e... 8743.3e-119
WP_093260688.1 SigE family RNA polymerase sigma factor [Saccharopolyspora s... 7801.8e-104
WP_083822248.1 SigE family RNA polymerase sigma factor [Saccharopolyspora s... 7772.4e-104
KEI44335.1 RNA polymerase sigma70 factor [Saccharopolyspora rectivirgula] 7775.5e-104
SEG84269.1 RNA polymerase sigma-70 factor, sigma-E family [Saccharopolyspor... 7715.5e-103
SFN20289.1 RNA polymerase sigma-70 factor, sigma-E family [Saccharopolyspor... 7681.5e-102
WP_093419421.1 SigE family RNA polymerase sigma factor [Saccharopolyspora f... 7591.2e-101
WP_093351222.1 SigE family RNA polymerase sigma factor [Saccharopolyspora j... 7546.3e-101
WP_093151454.1 SigE family RNA polymerase sigma factor [Saccharopolyspora a... 7531.2e-100

PSORT result

LocalizationCertaintyPSORT said
Not Clear