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IDSACE_0141 TypeCDS
From167516 nt length498
To167019 aa length165
Gene pI10.78
DefinitionECF subfamily sigma factor M.W (Da)18378
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4064 putative RNA polymerase ECF-subfamily sigma factor1423.0e-35
coelSCO4146 putative ECF subfamily sigma factor1092.0e-25
scabSCAB80681 putative RNA polymerase sigma factor1613.0e-41
saceSCAB80681 putative RNA polymerase sigma factor1613.0e-41

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 212-7850.11.5e-13

Sigma70_r4_21Sigma-70, region 4110-15744.39.4e-12

Sigma70_ECF1ECF sigma factor49-16338.41.1e-09

Sigma70_r41Sigma-70, region 4114-16236.03.2e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009949268.1 sigma-70 family RNA polymerase sigma factor [Saccharopolyspo... 7862.7e-106
SDW24813.1 RNA polymerase, sigma subunit, ECF family [Saccharopolyspora sha... 5921.1e-76
WP_093260646.1 RNA polymerase sigma factor [Saccharopolyspora shandongensis... 5921.6e-76
WP_093151437.1 RNA polymerase sigma factor [Saccharopolyspora antimicrobica... 5851.5e-75
WP_093351233.1 RNA polymerase subunit sigma-24 [Saccharopolyspora jiangxien... 5833.0e-75
SFN19817.1 RNA polymerase sigma-70 factor, ECF subfamily [Saccharopolyspora... 5826.5e-75
SEG84146.1 RNA polymerase, sigma subunit, ECF family [Saccharopolyspora hir... 5791.5e-74
WP_007454427.1 RNA polymerase sigma24 factor [Micromonospora lupini] >emb 4119.9e-49
SEE36419.1 RNA polymerase, sigma subunit, ECF family [Jiangella alba] 4081.6e-48
WP_069113127.1 RNA polymerase sigma factor [Jiangella alba] 4082.0e-48

PSORT result

LocalizationCertaintyPSORT said
Not Clear