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IDSACE_0594 TypeCDS
From653734 nt length393
To654126 aa length130
Gene pI10
Definitioncold-shock DNA-binding domain protein M.W (Da)14437
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3907 putative cold shock protein1452.0e-36
coelSCO4325 cspB cold shock protein B1368.0e-34
sgrSGR_3176 putative cold shock protein1443.0e-36
scabSCAB50821 putative cold shock protein1412.0e-35
saceSCAB50821 putative cold shock protein1412.0e-35
nfarnfa6390 putative cold shock protein1621.0e-41

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-6468.23.7e-19

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009945171.1 cold-shock protein [Saccharopolyspora erythraea] >emb 6561.8e-87
WP_043575984.1 MULTISPECIES: cold-shock protein [Actinopolyspora] >gb 6041.2e-79
WP_093268579.1 cold-shock protein [Saccharopolyspora shandongensis] 6041.5e-79
WP_017973120.1 cold-shock protein [Actinopolyspora halophila] 6031.8e-79
WP_093158271.1 cold-shock protein [Saccharopolyspora antimicrobica] 6013.2e-79
SDO99119.1 cold-shock DNA-binding protein family [Actinopolyspora xinjiange... 6006.0e-79
WP_093358871.1 cold-shock protein [Saccharopolyspora jiangxiensis] 5996.4e-79
WP_010308657.1 cold-shock protein [Saccharopolyspora spinosa] 5996.7e-79
SDY22397.1 cold-shock DNA-binding protein family [Saccharopolyspora shandon... 5997.4e-79
WP_092524376.1 cold-shock protein [Actinopolyspora saharensis] 5997.5e-79

PSORT result

LocalizationCertaintyPSORT said
Not Clear