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IDSACE_1418 TypeCDS
From1568002 nt length960
To1568961 aa length319
Gene pI5.83
Definitionputative ECF-family RNA polymerase sigma factor M.W (Da)35403
Note AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_424 putative RNA polymerase ECF-subfamily sigma factor2294.0e-61
coelSCO7112 putative ECF-family RNA polymerase sigma factor2248.0e-60
scabSCAB3921 putative RNA polymerase sigma factor2588.0e-70
saceSCAB3921 putative RNA polymerase sigma factor2588.0e-70
nfarnfa52790 putative sigma factor2592.0e-70

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 29-7360.58.8e-17

Sigma70_r4_21Sigma-70, region 4109-16042.43.8e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009947744.1 RNA polymerase sigma-70 factor [Saccharopolyspora erythraea]... 14710.0e+00
WP_017620742.1 RNA polymerase sigma-70 factor [Nocardiopsis gilva] 8288.5e-108
WP_092778614.1 RNA polymerase sigma-70 factor [Actinokineospora terrae] >em... 8023.3e-104
WP_075739995.1 MULTISPECIES: RNA polymerase sigma-70 factor [Actinoalloteic... 7851.5e-101
WP_083852953.1 RNA polymerase sigma-70 factor [Saccharomonospora glauca] 7849.7e-101
EIE99321.1 RNA polymerase sigma-70 factor, TIGR02957 family [Saccharomonospo... 7811.3e-100
WP_069848259.1 RNA polymerase sigma-70 factor [Actinoalloteichus hymeniacid... 7661.0e-98
WP_093940996.1 RNA polymerase sigma-70 factor [Actinoalloteichus hoggarensi... 7582.1e-97
WP_015786148.1 RNA polymerase sigma-70 factor [Saccharomonospora viridis] >... 7486.7e-96
WP_013019562.1 RNA polymerase sigma-70 factor [Stackebrandtia nassauensis] ... 7439.7e-95

PSORT result

LocalizationCertaintyPSORT said
Not Clear