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IDSACE_1454 TypeCDS
From1604834 nt length507
To1604328 aa length168
Gene pI9.45
DefinitionRNA polymerase ECF sigma factor M.W (Da)18612
Note AseI frg.K
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4996 putative RNA polymerase ECF sigma factor992.0e-22
sgrSGR_2241 putative RNA polymerase ECF-subfamily sigma factor1184.0e-28
scabSCAB65541 putative RNA polymerase ECF sigma factor1292.0e-31
saceSCAB65541 1292.0e-31

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4102-15358.43.6e-16

Sigma70_r41Sigma-70, region 4106-15545.43.9e-12

Sigma70_r21Sigma-70 region 220-7534.98.5e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009947700.1 SigE family RNA polymerase sigma factor [Saccharopolyspora e... 8011.9e-108
SDN19793.1 RNA polymerase sigma-70 factor, sigma-E family [Allokutzneria al... 5261.9e-66
WP_091376246.1 SigE family RNA polymerase sigma factor [Alloactinosynnema a... 5192.1e-65
WP_091450219.1 SigE family RNA polymerase sigma factor [Alloactinosynnema i... 5044.2e-63
WP_015105551.1 SigE family RNA polymerase sigma factor [Saccharothrix espan... 5018.4e-63
WP_018686794.1 E family RNA polymerase sigma-70 factor [Actinokineospora en... 5028.6e-63
WP_075134491.1 SigE family RNA polymerase sigma factor [Actinophytocola xin... 4974.7e-62
WP_086820288.1 SigE family RNA polymerase sigma factor [Allokutzneria sp. N... 4965.9e-62
WP_092781708.1 SigE family RNA polymerase sigma factor [Actinokineospora te... 4931.8e-61
WP_082403116.1 SigE family RNA polymerase sigma factor [Saccharothrix sp. N... 4921.9e-61

PSORT result

LocalizationCertaintyPSORT said
Not Clear