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IDSACE_1801 TypeCDS
From1985244 nt length1404
To1983841 aa length467
GenesigA pI4.83
DefinitionRNA polymerase major sigma factor M.W (Da)51384
Note AseI frg.G
SignalP v.4.0Signal peptide | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2444 RNA polymerase major sigma factor, sigma-70 family5255.0e-150
coelSCO5820 major vegetative sigma factor rpoD4371.0e-123
sgrSGR_1701 RNA polymerase principal sigma factor hrdB5219.0e-149
scabSCAB24441 RNA polymerase major sigma factor, sigma-70 family5323.0e-152
saceSCAB24441 RNA polymerase major sigma factor, sigma-70 family5323.0e-152
nfarnfa37590 putative principal sigma factor5422.0e-155

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3313-38899.29.3e-29

Sigma70_r21Sigma-70 region 2234-30380.45.5e-23

Sigma70_r41Sigma-70, region 4402-45574.04.5e-21

Sigma70_r1_21Sigma-70 factor, region 1.2165-19860.69.5e-17

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009947332.1 RNA polymerase sigma factor [Saccharopolyspora erythraea] >e... 15760.0e+00
WP_093157484.1 MULTISPECIES: RNA polymerase sigma factor [Saccharopolyspora... 15250.0e+00
WP_093416526.1 RNA polymerase sigma factor [Saccharopolyspora flava] >emb 15180.0e+00
WP_093265020.1 RNA polymerase sigma factor [Saccharopolyspora shandongensis... 15180.0e+00
WP_092600723.1 RNA polymerase sigma factor [Actinopolyspora xinjiangensis] ... 14980.0e+00
WP_029720930.1 RNA polymerase sigma factor [Saccharopolyspora rectivirgula]... 14970.0e+00
WP_019853533.1 RNA polymerase sigma factor [Actinopolyspora mortivallis] 14960.0e+00
WP_084134185.1 RNA polymerase sigma factor [Actinopolyspora erythraea] 14940.0e+00
KGI80858.1 RNA polymerase sigma factor [Actinopolyspora erythraea] 14930.0e+00
WP_092520222.1 RNA polymerase sigma factor [Actinopolyspora saharensis] >em... 14840.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear