-- | --

IDSACE_1934 TypeCDS
From2111807 nt length921
To2110887 aa length306
Gene pI4.74
Definitionputative RNA polymerase sigma factor M.W (Da)32196
Note AseI frg.G
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_7424 putative RNA polymerase ECF-subfamily sigma factor3202.0e-88
coelSCO0803 putative RNA polymerase sigma factor.2362.0e-63
sgrSGR_5030 putative RNA polymerase ECF-subfamily sigma factor1662.0e-42
nfarnfa4970 putative sigma factor2853.0e-78

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 211-7553.81.1e-14

Sigma70_r4_21Sigma-70, region 4110-16134.88.4e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
EQD87620.1 RNA polymerase sigma 70 [Saccharopolyspora erythraea D] 12287.8e-169
WP_009942579.1 DNA-directed RNA polymerase sigma-70 factor [Saccharopolyspo... 12261.0e-168
OLE21221.1 RNA polymerase subunit sigma-70 [Catenulispora sp. 13_1_20CM_3_70... 7561.9e-97
WP_092529666.1 RNA polymerase subunit sigma-70 [Yuhushiella deserti] >emb 7406.0e-95
WP_091454724.1 RNA polymerase subunit sigma-70 [Alloactinosynnema iranicum]... 7362.7e-94
WP_051262385.1 RNA polymerase subunit sigma-70 [Streptomyces sp. CNH287] 7163.9e-91
WP_078974039.1 RNA polymerase subunit sigma-70 [Streptomyces scabrisporus] ... 7144.8e-91
WP_067166403.1 RNA polymerase subunit sigma-70 [Streptomyces sp. ERV7] >gb 7074.7e-90
WP_020555734.1 hypothetical protein [Streptomyces scabrisporus] 7051.2e-89
WP_081900201.1 RNA polymerase subunit sigma-70 [Allokutzneria albata] 6999.3e-89

PSORT result

LocalizationCertaintyPSORT said
Not Clear