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IDSACE_2658 TypeCDS
From2905591 nt length204
To2905388 aa length67
Gene pI4.51
Definitioncold-shock DNA-binding domain protein M.W (Da)7278
Note AseI frg.D
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4820 putative cold shock protein1128.0e-27
coelSCO4505 scoF2 cold shock protein1021.0e-23
sgrSGR_3002 putative cold shock protein1112.0e-26
scabSCAB38231 putative cold shock protein1126.0e-27
saceSCAB38231 putative cold shock protein1126.0e-27

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-65101.91.1e-29

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009951404.1 cold-shock protein [Saccharopolyspora erythraea] >emb 3533.1e-43
WP_093351970.1 cold-shock protein [Saccharopolyspora jiangxiensis] >emb 3177.6e-38
WP_093151735.1 cold-shock protein [Saccharopolyspora antimicrobica] >emb 3161.1e-37
WP_017972566.1 MULTISPECIES: cold-shock protein [Actinopolyspora] >emb 3108.8e-37
WP_092927680.1 cold-shock protein [Actinopolyspora alba] >emb 3101.0e-36
WP_092628968.1 cold-shock protein [Actinopolyspora mzabensis] >emb 3072.4e-36
WP_092925761.1 cold-shock protein [Actinopolyspora alba] >emb 3046.9e-36
WP_092598332.1 cold-shock protein [Actinopolyspora xinjiangensis] >emb 3031.2e-35
WP_093267624.1 cold-shock protein [Saccharopolyspora shandongensis] >emb 3021.4e-35
WP_092974098.1 cold-shock protein [Actinopolyspora righensis] >emb 3012.1e-35

PSORT result

LocalizationCertaintyPSORT said
Not Clear