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IDSACE_5521 TypeCDS
From6204086 nt length594
To6204679 aa length197
Gene pI7.1
DefinitionRNA polymerase, sigma-24 subunit, ECF subfamily M.W (Da)21593
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5123 putative RNA polymerase ECF-subfamily sigma factor1322.0e-32
coelSCO2954 putative RNA polymerase sigma factor1224.0e-29
sgrSGR_718 putative RNA polymerase ECF-subfamily sigma factor1123.0e-26
scabSCAB55901 putative RNA polymerase sigma factor1331.0e-32
saceSCAB55901 putative RNA polymerase sigma factor1331.0e-32

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 238-10663.79e-18

Sigma70_r41Sigma-70, region 4139-18745.82.9e-12

Sigma70_r4_21Sigma-70, region 4135-18635.16.9e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009950000.1 RNA polymerase subunit sigma-24 [Saccharopolyspora erythraea... 8783.4e-119
EQD82666.1 RNA polymerase subunit sigma-24 [Saccharopolyspora erythraea D] 8785.4e-119
WP_029535099.1 RNA polymerase subunit sigma-24 [Saccharopolyspora spinosa] 6197.4e-80
WP_093276742.1 RNA polymerase subunit sigma-24 [Saccharopolyspora shandonge... 5832.2e-74
WP_093412851.1 hypothetical protein [Saccharopolyspora flava] >emb 4132.0e-48
WP_093271926.1 hypothetical protein [Saccharopolyspora shandongensis] >emb 3854.8e-44
WP_093273891.1 hypothetical protein [Saccharopolyspora shandongensis] >emb 3532.0e-39
WP_055615146.1 RNA polymerase [Streptomyces phaeochromogenes] 3131.5e-33
WP_033390683.1 hypothetical protein [Kibdelosporangium aridum] >emb 3103.5e-33
WP_076994615.1 hypothetical protein [Actinosynnema sp. ALI-1.44] >gb 3094.5e-33

PSORT result

LocalizationCertaintyPSORT said
Not Clear