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IDSACE_5686 TypeCDS
From6387891 nt length843
To6388733 aa length280
Genesig1 pI5.6
DefinitionRNA polymerase sigma factor M.W (Da)31787
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3013 putative RNA polymerase sigma factor, sigH2801.0e-76
coelSCO5243 sig1 RNA polymerase sigma factor2554.0e-69
sgrSGR_2271 RNA polymerase sigma factor2819.0e-77
scabSCAB30101 putative RNA polymerase sigma factor2764.0e-75
saceSCAB30101 putative RNA polymerase sigma factor2764.0e-75

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4209-25866.97.1e-19

Sigma70_r21Sigma-70 region 244-11364.26.1e-18

Sigma70_r31Sigma-70 region 3128-18156.81.6e-15

Sigma70_r4_21Sigma-70, region 4204-25648.45e-13

HTH_231Homeodomain-like domain215-25134.01.6e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009948227.1 RNA polymerase sigma factor SigF [Saccharopolyspora erythrae... 13730.0e+00
BAD15074.1 RNA polymerase alternative sigma factor [Saccharopolyspora eryth... 13670.0e+00
WP_093345251.1 RNA polymerase sigma factor SigF [Saccharopolyspora jiangxie... 11391.9e-156
WP_093148283.1 RNA polymerase sigma factor SigF [Saccharopolyspora antimicr... 11392.6e-156
WP_010306946.1 SigB/SigF/SigG family RNA polymerase sigma factor [Saccharop... 11114.2e-152
WP_093261368.1 SigB/SigF/SigG family RNA polymerase sigma factor [Saccharop... 11037.3e-151
WP_093413028.1 SigB/SigF/SigG family RNA polymerase sigma factor [Saccharop... 10783.9e-147
WP_029719420.1 SigB/SigF/SigG family RNA polymerase sigma factor [Saccharop... 10291.1e-139
WP_092522144.1 SigB/SigF/SigG family RNA polymerase sigma factor [Actinopol... 10123.8e-137
WP_019854648.1 RNA polymerase sigma factor SigF [Actinopolyspora mortivalli... 10063.9e-136

PSORT result

LocalizationCertaintyPSORT said
Not Clear