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IDSACE_6051 TypeCDS
From6787938 nt length543
To6787396 aa length180
GenerimM pI4.31
Definition16S rRNA processing protein M.W (Da)19462
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2642 putative 16S rRNA processing protein1493.0e-37
coelSCO5593 hypothetical protein1348.0e-33
sgrSGR_1887 putative 16S rRNA processing protein1393.0e-34
scabSCAB26171 putative 16S rRNA processing protein1422.0e-35
saceSCAB26171 putative 16S rRNA processing protein1422.0e-35
nfarnfa41550 putative 16S rRNA processing protein1568.0e-40

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RimM1RimM N-terminal domain11-9474.74.7e-21

PRC1PRC-barrel domain102-17543.12.9e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009943618.1 ribosome maturation factor RimM [Saccharopolyspora erythraea... 7104.2e-94
WP_093344532.1 ribosome maturation factor RimM [Saccharopolyspora jiangxien... 5272.0e-66
WP_093146637.1 ribosome maturation factor RimM [Saccharopolyspora antimicro... 5247.2e-66
WP_093262771.1 ribosome maturation factor RimM [Saccharopolyspora shandonge... 5212.2e-65
WP_010305958.1 ribosome maturation factor RimM [Saccharopolyspora spinosa] 5125.1e-64
WP_029722335.1 ribosome maturation factor RimM [Saccharopolyspora rectivirg... 5012.0e-62
WP_093413381.1 ribosome maturation factor RimM [Saccharopolyspora flava] 4398.5e-53
WP_030430525.1 ribosome maturation factor RimM [Allokutzneria albata] >emb 4212.1e-50
SFS36007.1 16S rRNA processing protein RimM [Saccharopolyspora flava] 4119.9e-49
WP_010541548.1 ribosome maturation factor RimM [Dietzia alimentaria] 4021.9e-47

PSORT result

LocalizationCertaintyPSORT said
Not Clear