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IDSACE_6295 TypeCDS
From7046717 nt length1929
To7044789 aa length642
Generho1 pI9.58
Definitionputative transcription termination factor Rho M.W (Da)70329
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2915 putative transcription termination factor Rho6350.0e+00
coelSCO5357 SCBAC5H2.26 rho transcription terminator factor (fragment)5463.0e-156
sgrSGR_2179 putative transcription termination factor Rho6270.0e+00
scabSCAB28931 putative transcription termination factor Rho6550.0e+00
saceSCAB28931 putative transcription termination factor Rho6550.0e+00
nfarnfa10520 putative transcription termination factor Rho5971.0e-171

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Rho_RNA_bind1Rho termination factor, RNA-binding domain269-344101.61.4e-29

ATP-synt_ab1ATP synthase alpha/beta family, nucleotide-binding domain376-57974.39.7e-21

Rho_N1Rho termination factor, N-terminal domain36-7136.82.5e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
CAM05467.1 putative transcription termination factor Rho [Saccharopolyspora... 17950.0e+00
WP_009948460.1 transcription termination factor Rho [Saccharopolyspora eryt... 17950.0e+00
WP_093413639.1 transcription termination factor Rho [Saccharopolyspora flav... 17610.0e+00
WP_093271057.1 transcription termination factor Rho [Saccharopolyspora shan... 17600.0e+00
WP_010305206.1 transcription termination factor Rho [Saccharopolyspora spin... 17590.0e+00
WP_093159969.1 transcription termination factor Rho [Saccharopolyspora anti... 17580.0e+00
SFS38925.1 transcription termination factor Rho [Saccharopolyspora flava] 17570.0e+00
WP_093357134.1 transcription termination factor Rho [Saccharopolyspora jian... 17570.0e+00
WP_029721662.1 transcription termination factor Rho [Saccharopolyspora rect... 17140.0e+00
WP_092601782.1 transcription termination factor Rho [Actinopolyspora xinjia... 17020.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear