-- | --

IDSACE_6430 TypeCDS
From7204920 nt length690
To7204231 aa length229
GenesigR pI4.81
DefinitionRNA polymerase sigma factor M.W (Da)25984
Note AseI frg.A
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3038 putative RNA polymerase ECF-subfamily sigma factor2961.0e-81
coelSCO5216 sigR RNA polymerase sigma factor2601.0e-70
sgrSGR_2306 putative RNA polymerase ECF-subfamily sigma factor2909.0e-80
scabSCAB30381 putative RNA polymerase ECF-subfamily sigma factor2823.0e-77
saceSCAB30381 putative RNA polymerase ECF-subfamily sigma factor2823.0e-77
nfarnfa45840 putative sigma factor2769.0e-76

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 250-11363.69.3e-18

Sigma70_r4_21Sigma-70, region 4155-20556.81.2e-15

Sigma70_r41Sigma-70, region 4158-20743.71.3e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009949679.1 RNA polymerase sigma factor RpoE [Saccharopolyspora erythrae... 11534.6e-160
WP_010304771.1 RNA polymerase sigma factor RpoE [Saccharopolyspora spinosa] 9703.6e-132
WP_093277390.1 RNA polymerase subunit sigma [Saccharopolyspora shandongensi... 9583.0e-130
WP_029720346.1 RNA polymerase sigma factor RpoE [Saccharopolyspora rectivir... 9443.3e-128
WP_093157945.1 MULTISPECIES: RNA polymerase subunit sigma [Saccharopolyspor... 9415.2e-128
SFT03996.1 RNA polymerase, sigma subunit, ECF family [Saccharopolyspora fla... 9365.8e-127
WP_093423129.1 RNA polymerase subunit sigma [Saccharopolyspora flava] 9342.5e-126
WP_017973478.1 RNA polymerase sigma factor RpoE [Actinopolyspora halophila] 9113.5e-123
WP_052428445.1 MULTISPECIES: RNA polymerase subunit sigma [Actinopolyspora] 9125.0e-123
KGI80062.1 RNA polymerase sigma factor RpoE [Actinopolyspora erythraea] >emb... 9099.0e-123

PSORT result

LocalizationCertaintyPSORT said
Not Clear