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IDSACE_6625 TypeCDS
From7422595 nt length555
To7423149 aa length184
GenesigC pI5.15
DefinitionRNA polymerase sigma factor M.W (Da)20484
Note AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_898 putative RNA polymerase ECF-subfamily sigma factor1709.0e-44
coelSCO0864 probable ECF-family sigma factor.1385.0e-34
sgrSGR_6228 putative RNA polymerase ECF-subfamily sigma factor1609.0e-41
scabSCAB41571 putative RNA polymerase sigma factor1793.0e-46
saceSCAB41571 putative RNA polymerase sigma factor1793.0e-46

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4121-17261.83.2e-17

Sigma70_r21Sigma-70 region 229-9549.81.9e-13

Sigma70_r41Sigma-70, region 4125-17235.74e-09

Sigma70_ECF1ECF sigma factor27-17229.08.1e-07

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
CAM05791.1 RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 23... 8311.9e-112
WP_021341780.1 RNA polymerase sigma factor SigC [Saccharopolyspora erythrae... 8277.2e-112
WP_093269652.1 RNA polymerase subunit sigma [Saccharopolyspora shandongensi... 6202.6e-80
WP_093358135.1 RNA polymerase subunit sigma [Saccharopolyspora jiangxiensis... 6116.3e-79
WP_093147688.1 RNA polymerase subunit sigma [Saccharopolyspora antimicrobic... 6091.3e-78
WP_093270199.1 RNA polymerase subunit sigma [Saccharopolyspora shandongensi... 6055.8e-78
SDY50416.1 RNA polymerase sigma-70 factor, ECF subfamily [Saccharopolyspora... 6035.7e-77
WP_029721677.1 RNA polymerase sigma factor SigC [Saccharopolyspora rectivir... 5873.4e-75
WP_010314742.1 RNA polymerase sigma factor SigC [Saccharopolyspora spinosa] 5812.6e-74
WP_025356731.1 RNA polymerase sigma factor SigC [Kutzneria albida] >gb 5803.6e-74

PSORT result

LocalizationCertaintyPSORT said
Not Clear