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IDSACE_6853 TypeCDS
From7663236 nt length3912
To7659325 aa length1303
Gene pI6.42
DefinitionDNA-directed RNA polymerase, beta’ subunit M.W (Da)144955
Note AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4915 RNA polymerase beta prime subunit19700.0e+00
coelSCO4655 DNA-directed RNA polymerase beta' chain (fragment)19100.0e+00
sgrSGR_2868 putative RNA polymerase beta prime subunit19500.0e+00
scabSCAB37181 RNA polymerase beta prime subunit19690.0e+00
saceSCAB37181 RNA polymerase beta prime subunit19690.0e+00
nfarnfa50980 putative RNA polymerase beta' subunit21940.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb1_11RNA polymerase Rpb1, domain 17-417272.73.8e-81

RNA_pol_Rpb1_51RNA polymerase Rpb1, domain 5828-1201220.42.6e-65

RNA_pol_Rpb1_21RNA polymerase Rpb1, domain 2419-560134.53.6e-39

RNA_pol_Rpb1_31RNA polymerase Rpb1, domain 3564-72186.61.5e-24

RNA_pol_Rpb1_41RNA polymerase Rpb1, domain 4753-81339.34.5e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009944110.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 68360.0e+00
WP_093265678.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 65720.0e+00
WP_010315473.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 65720.0e+00
WP_093414215.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 65330.0e+00
WP_093155261.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 65230.0e+00
WP_093352191.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 65160.0e+00
WP_029719110.1 DNA-directed RNA polymerase subunit beta' [Saccharopolyspora... 64380.0e+00
WP_043570371.1 DNA-directed RNA polymerase subunit beta' [Actinopolyspora e... 62500.0e+00
WP_092597369.1 DNA-directed RNA polymerase subunit beta' [Actinopolyspora x... 62440.0e+00
WP_092626247.1 DNA-directed RNA polymerase subunit beta' [Actinopolyspora m... 62290.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear