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IDSACE_6951 TypeCDS
From7768245 nt length882
To7769126 aa length293
Gene pI7.26
Definitionputative RNA polymerase sigma factor M.W (Da)31940
Note AseI frg.F
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4735 putative RNA polymerase ECF-subfamily sigma factor2171.0e-57
coelSCO3323 putative RNA polymerase sigma factor2023.0e-53
sgrSGR_4151 RNA polymerase ECF-subfamily sigma factor2172.0e-57
scabSCAB39121 putative RNA polymerase ECF-subfamily sigma factor2162.0e-57
saceSCAB39121 putative RNA polymerase ECF-subfamily sigma factor2162.0e-57

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 2130-19749.22.9e-13

Sigma70_r41Sigma-70, region 4240-28443.51.5e-11

Sigma70_r4_21Sigma-70, region 4233-28438.84.9e-10

Sigma70_ECF1ECF sigma factor117-27425.21.2e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009943981.1 DNA-directed RNA polymerase sigma-70 factor [Saccharopolyspo... 12309.5e-170
WP_093269466.1 RNA polymerase subunit sigma-70 [Saccharopolyspora shandonge... 7811.3e-102
WP_093414351.1 RNA polymerase subunit sigma-70 [Saccharopolyspora flava] >e... 7604.1e-99
WP_093145691.1 RNA polymerase subunit sigma-70 [Saccharopolyspora antimicro... 7541.2e-98
WP_093354059.1 RNA polymerase subunit sigma-70 [Saccharopolyspora jiangxien... 7541.4e-98
WP_017976930.1 hypothetical protein [Actinopolyspora halophila] 7321.2e-94
WP_029719196.1 DNA-directed RNA polymerase sigma-70 factor [Saccharopolyspo... 7237.6e-94
SDR10617.1 RNA polymerase sigma-70 factor, ECF subfamily [Actinopolyspora s... 7223.6e-93
WP_092626808.1 RNA polymerase subunit sigma-70 [Actinopolyspora mzabensis] 7208.8e-93
WP_092926093.1 RNA polymerase subunit sigma-70 [Actinopolyspora alba] 7191.2e-92

PSORT result

LocalizationCertaintyPSORT said
Not Clear