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IDSACE_7382 TypeCDS
From8198636 nt length486
To8199121 aa length161
GenesigT pI8.25
Definitionputative RNA polymerase sigma factor M.W (Da)17613
Note AseI frg.B
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4303 putative RNA polymerase ECF-subfamily sigma factor1452.0e-36
coelSCO3892 putative RNA polymerase sigma factor1244.0e-30
sgrSGR_3687 putative RNA polymerase ECF-subfamily sigma factor1492.0e-37
scabSCAB45951 putative RNA polymerase sigma factor1431.0e-35
saceSCAB45951 putative RNA polymerase sigma factor1431.0e-35
nfarnfa56600 putative sigma factor1322.0e-32

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 479-13261.24.9e-17

Sigma70_r21Sigma-70 region 22-5148.26.3e-13

Sigma70_r41Sigma-70, region 485-13340.99.8e-11

Sigma70_ECF1ECF sigma factor76-13422.38.8e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
CAM06538.1 putative RNA polymerase sigma factor [Saccharopolyspora erythrae... 8322.2e-113
WP_009945745.1 RNA polymerase sigma factor SigM [Saccharopolyspora erythrae... 8301.9e-112
WP_093150732.1 MULTISPECIES: RNA polymerase sigma factor SigM [Saccharopoly... 7772.5e-104
WP_093260861.1 RNA polymerase sigma factor SigM [Saccharopolyspora shandong... 7711.7e-103
WP_029535943.1 RNA polymerase sigma factor SigM [Saccharopolyspora spinosa] 7564.0e-101
SFS85171.1 RNA polymerase, sigma subunit, ECF family [Saccharopolyspora fla... 7385.9e-99
WP_093419612.1 RNA polymerase sigma factor SigM [Saccharopolyspora flava] 7355.0e-98
SDW30111.1 RNA polymerase sigma-70 factor, ECF subfamily [Saccharopolyspora... 7052.8e-94
SHE63043.1 RNA polymerase, sigma subunit, ECF family [Streptoalloteichus hi... 7081.0e-93
WP_073479745.1 RNA polymerase sigma factor SigM [Streptoalloteichus hindust... 7071.0e-93

PSORT result

LocalizationCertaintyPSORT said
Not Clear