-- | --

IDSAM23877_0867 TypeCDS
From847780 nt length795
To848574 aa length264
GenesigF pI6.86
DefinitionRNA polymerase sigma factor SigF M.W (Da) 29545
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO7341 putative RNA polymerase secondary sigma factor5120.0e+00

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4208-25664.54.1e-18

Sigma70_r21Sigma-70 region 243-11162.61.9e-17

Sigma70_r4_21Sigma-70, region 4203-24840.31.6e-10

Sigma70_r31Sigma-70 region 3122-17533.72.7e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053126932.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11852.6e-163
WP_055420888.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11497.1e-158
WP_121751151.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11443.8e-157
WP_210961349.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11435.4e-157
WP_030403360.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 11392.1e-156
WP_217169255.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11305.8e-155
WP_191886170.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11271.4e-154
WP_107476764.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11271.4e-154
WP_115746749.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11271.4e-154
WP_125636014.1 MULTISPECIES: SigB/SigF/SigG family RNA polymerase sigma fac... 11262.3e-154

PSORT result

LocalizationCertaintyPSORT said
Not Clear