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IDSAM23877_1530 TypeCDS
From1573490 nt length273
To1573218 aa length90
GenerpoZ pI4.38
DefinitionDNA-directed RNA polymerase subunit omega M.W (Da) 9709
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6872 RNA polymerase omega subunit1765.0e-60
coelSCO1478 putative RNA polymerase omega subunit1792.0e-61
sgrSGR_6056 putative RNA polymerase omega subunit1771.0e-60

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RNA_pol_Rpb61RNA polymerase Rpb618-8054.57.1e-15

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003977348.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4551.1e-57
WP_003988945.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4541.7e-57
WP_005319902.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4522.8e-57
WP_018570191.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [unc... 4523.2e-57
WP_067025681.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4513.8e-57
WP_003982715.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4513.9e-57
WP_019325064.1 DNA-directed RNA polymerase subunit omega [Streptomyces sp. ... 4514.7e-57
WP_028814064.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4514.7e-57
WP_106415143.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [unc... 4514.8e-57
WP_033321800.1 MULTISPECIES: DNA-directed RNA polymerase subunit omega [Str... 4505.3e-57

PSORT result

LocalizationCertaintyPSORT said
Not Clear