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IDSAM23877_1778 TypeCDS
From1835159 nt length543
To1834617 aa length180
GenesigK pI7.51
DefinitionECF RNA polymerase sigma factor SigK M.W (Da) 20494
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_6582 putative RNA polymerase ECF-subfamily sigma factor3325.0e-119
coelSCO1723 putative RNA polymerase sigma factor3081.0e-109
sgrSGR_5884 putative RNA polymerase ECF-subfamily sigma factor2171.0e-73

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 223-8863.97.9e-18

Sigma70_r4_21Sigma-70, region 4119-17253.81e-14

Sigma70_r41Sigma-70, region 4125-17451.83.8e-14

Sigma70_ECF1ECF sigma factor5-16527.42.5e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053128435.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 7621.3e-101
WP_217170833.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. AC512... 7463.9e-99
WP_073731012.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7412.2e-98
WP_055416138.1 sigma-70 family RNA polymerase sigma factor [Streptomyces pa... 7402.3e-98
WP_189230435.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 7393.5e-98
WP_210961809.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7394.0e-98
WP_216721566.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. A108]... 7385.8e-98
WP_217250958.1 ECF RNA polymerase sigma factor SigK [Streptomyces sp. AC602... 7379.2e-98
WP_125495570.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7333.0e-97
WP_100049036.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 7315.5e-97

PSORT result

LocalizationCertaintyPSORT said
Not Clear