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IDSAM23877_2991 TypeCDS
From3160067 nt length525
To3159543 aa length174
GenesigL pI6.28
DefinitionECF RNA polymerase sigma factor SigL M.W (Da) 19502
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_5123 putative RNA polymerase ECF-subfamily sigma factor3406.0e-122
coelSCO2954 putative RNA polymerase sigma factor3512.0e-126

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 216-8458.53.9e-16

Sigma70_r41Sigma-70, region 4116-16451.64.5e-14

Sigma70_r4_21Sigma-70, region 4112-16234.97.9e-09

Sigma70_ECF1ECF sigma factor68-15925.87.8e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003975857.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 9001.3e-122
WP_007450155.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8981.3e-122
AIJ15513.2 RNA polymerase sigma factor SigL [Streptomyces lividans TK24] >gb... 8991.4e-122
AQS69332.1 RNA polymerase subunit sigma [Streptomyces pactum] >gb 9001.4e-122
EOY48013.1 RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces livid... 9001.4e-122
9001.5e-122
PVD11039.1 RNA polymerase subunit sigma [Streptomyces sp. CS207] >gb 8991.8e-122
WP_166661591.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8953.8e-122
GGQ69919.1 RNA polymerase sigma factor [Streptomyces flaveolus] 8965.9e-122
WP_153179613.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 8959.2e-122

PSORT result

LocalizationCertaintyPSORT said
Not Clear