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IDSAM23877_3251 TypeCDS
From3464637 nt length999
To3463639 aa length332
GenehrdD pI4.91
DefinitionRNA polymerase principal sigma factor HrdD M.W (Da) 37170
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3694 putative RNA polymerase sigma factor5990.0e+00
coelSCO3202 RNA polymerase principal sigma factor6510.0e+00
sgrSGR_4276 RNA polymerase principal sigma factor hrdD5670.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3179-25591.32.8e-26

Sigma70_r21Sigma-70 region 2100-17073.57.7e-21

Sigma70_r41Sigma-70, region 4269-32160.19.6e-17

Sigma70_r1_21Sigma-70 factor, region 1.234-6745.64.6e-12

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053132639.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 15640.0e+00
WP_003975615.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15550.0e+00
WP_164250304.1 sigma-70 family RNA polymerase sigma factor [Streptomyces co... 15550.0e+00
WP_133889067.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15550.0e+00
WP_007388798.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15510.0e+00
WP_030190975.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15500.0e+00
WP_031044499.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 15500.0e+00
WP_106518440.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15490.0e+00
WP_052839251.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15490.0e+00
WP_164384364.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 15480.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear