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IDSAM23877_3380 TypeCDS
From3595186 nt length384
To3594803 aa length127
Gene pI7.54
DefinitionCold shock protein CspC M.W (Da) 13571
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3907 putative cold shock protein2473.0e-87
coelSCO4325 cspB cold shock protein B2523.0e-89
sgrSGR_3176 putative cold shock protein2395.0e-84

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-6371.53.4e-20

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053132946.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6521.5e-86
WP_217171303.1 cold shock domain-containing protein [Streptomyces sp. AC512... 6494.1e-86
WP_073729623.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6486.3e-86
WP_215174546.1 cold shock domain-containing protein [Streptomyces sp. ISL-1... 6451.7e-85
WP_043381698.1 cold-shock protein [Streptomyces mutabilis] >gb 6451.7e-85
WP_003974650.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6442.0e-85
WP_161163330.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 6442.4e-85
WP_121747655.1 cold-shock protein [Streptomyces sp. E2N166] 6433.4e-85
WP_019326623.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 6424.1e-85
WP_190204800.1 cold-shock protein [Streptomyces fumanus] >dbj 6425.4e-85

PSORT result

LocalizationCertaintyPSORT said
Not Clear