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IDSAM23877_3649 TypeCDS
From3883950 nt length951
To3884900 aa length316
GenesigF pI5.94
DefinitionRNA polymerase sigma-F factor M.W (Da) 34794
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4185 putative RNA polymerase sigma factor4962.0e-179
coelSCO4035 RNA polymerase sigma factor (fragment)5130.0e+00
sgrSGR_3551 "RNA polymerase sigma factor, sigma F"5030.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 296-16568.13.7e-19

Sigma70_r41Sigma-70, region 4262-30966.21.2e-18

Sigma70_r31Sigma-70 region 3175-23858.83.9e-16

Sigma70_r4_21Sigma-70, region 4256-30841.66.3e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_100047668.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 12297.0e-169
WP_053142577.1 RNA polymerase sigma factor SigF [Streptomyces ambofaciens] ... 12329.8e-169
GGY55542.1 RNA polymerase sigma-F factor [Streptomyces geysiriensis] >dbj 12281.0e-168
PVD04068.1 RNA polymerase sigma factor SigF [Streptomyces sp. CS207] >gb 12271.4e-168
WP_199577850.1 RNA polymerase sigma factor SigF [Streptomyces sp. CRB46] 12281.6e-168
12281.7e-168
GGQ27906.1 RNA polymerase sigma-F factor [Streptomyces mutabilis] 12281.7e-168
WP_031017799.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12281.8e-168
WP_175462600.1 RNA polymerase sigma factor SigF [Streptomyces sp. KAI 90] >... 12281.8e-168
WP_115746496.1 RNA polymerase sigma factor SigF [Streptomyces sp. CB09001] ... 12261.8e-168

PSORT result

LocalizationCertaintyPSORT said
Not Clear