ID	SAM23877_4007	Type	CDS
From	4259654	nt length	597
To	4260250	aa length	198
Gene		pI	9.89
Definition	putative RNA polymerase sigma factor RfaY	M.W (Da)	21618
Note	Evidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology	AseI frg.
SignalP v.4.0	Non-secretory protein | plot	Category

Orthologs (if any)

Pfam search result

	Model	No.	Description	Position (aa)	Score	E-value
	Sigma70_r4_2	1	Sigma-70, region 4	138-190	47.0	1.4e-12
	Sigma70_r4	1	Sigma-70, region 4	143-191	43.3	1.8e-11
	Sigma70_r2	1	Sigma-70 region 2	46-110	43.0	2.6e-11

BLAST search result (top 10 hits)

ID	Description	Score	E-value
AKZ57052.1	putative RNA polymerase sigma factor RfaY [Streptomyces ambofacie...	804	2.0e-107
WP_053142636.1	SigE family RNA polymerase sigma factor [Streptomyces ambofa...	783	2.0e-104
WP_063484492.1	SigE family RNA polymerase sigma factor [Streptomyces ambofa...	780	7.6e-104
WP_189229990.1	SigE family RNA polymerase sigma factor [Streptomyces flaveo...	777	2.1e-103
WP_114528551.1	SigE family RNA polymerase sigma factor [Streptomyces parvul...	776	2.8e-103
GGR55473.1	RNA polymerase sigma factor [Streptomyces parvulus]	775	3.4e-103
WP_161166931.1	MULTISPECIES: SigE family RNA polymerase sigma factor [uncla...	775	3.9e-103
WP_064729026.1	MULTISPECIES: SigE family RNA polymerase sigma factor [Strep...	775	4.0e-103
WP_077796344.1	SigE family RNA polymerase sigma factor [Streptomyces sp. JH...	772	9.7e-103
WP_188185354.1	SigE family RNA polymerase sigma factor [Streptomyces sp. TR...	772	1.2e-102

PSORT result

Localization	Certainty	PSORT said
Not Clear

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