-- | --

IDSAM23877_4203 TypeCDS
From4461486 nt length540
To4460947 aa length179
GenesigE pI6.30
DefinitionRNA polymerase sigma-E factor M.W (Da) 20757
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4706 putative RNA polymerase ECF-subfamily sigma factor3032.0e-107
coelSCO3356 ECF sigma factor3087.0e-110
sgrSGR_4125 putative RNA polymerase ECF-subfamily sigma factor2884.0e-101

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4104-15560.01.2e-16

Sigma70_r41Sigma-70, region 4109-15750.97.5e-14

Sigma70_r21Sigma-70 region 216-7834.41.2e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053134953.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 7698.4e-103
WP_100048447.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7593.3e-101
WP_161166322.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7576.3e-101
WP_043371941.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7551.3e-100
WP_216724272.1 SigE family RNA polymerase sigma factor [Streptomyces sp. A1... 7541.9e-100
WP_190167425.1 SigE family RNA polymerase sigma factor [Streptomyces malach... 7507.7e-100
WP_037939834.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7491.0e-99
WP_189561870.1 SigE family RNA polymerase sigma factor [Streptomyces pilosu... 7472.1e-99
WP_190101172.1 SigE family RNA polymerase sigma factor [Streptomyces griseo... 7462.6e-99
WP_184819904.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7463.4e-99

PSORT result

LocalizationCertaintyPSORT said
Not Clear