-- | --

IDSAM23877_4323 TypeCDS
From4585044 nt length204
To4584841 aa length67
GenecspD pI4.48
Definitioncold shock protein-like protein M.W (Da) 7187
NoteEvidence 2a : Function of homologous gene experimentally demonstrated in an other organism%3B PubMedId : 1622933%2C 21160192%2C 2186030%2C 9868784%3B Product type f : factor AseI frg.
SignalP v.4.0Non-secretory protein | plot Category


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_4820 putative cold shock protein1335.0e-44
coelSCO4505 scoF2 cold shock protein1371.0e-45
sgrSGR_3002 putative cold shock protein1293.0e-42

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-66110.13e-32

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_003974443.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3468.6e-42
WP_053654525.1 cold-shock protein [Streptomyces sp. MMG1121] >gb 3423.2e-41
WP_003992177.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3423.7e-41
WP_004984723.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3414.7e-41
WP_007490911.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3415.4e-41
WP_073499902.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3415.4e-41
WP_069779342.1 cold-shock protein [Streptomyces fodineus] >gb 3415.4e-41
WP_030145317.1 cold-shock protein [Streptomyces violaceorubidus] 3398.5e-41
WP_189860865.1 cold-shock protein [Streptomyces poonensis] >dbj 3399.5e-41
WP_030379745.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3391.1e-40

PSORT result

LocalizationCertaintyPSORT said
Not Clear