-- | --

IDSAM23877_4808 TypeCDS
From5094814 nt length510
To5094305 aa length169
Gene pI9.47
Definitionputative RNA polymerase ECF sigma factor M.W (Da) 18787
NoteEvidence 3 : Function proposed based on presence of conserved amino acid motif%2C structural feature or limited homology AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4996 putative RNA polymerase ECF sigma factor3034.0e-108
sgrSGR_4062 putative RNA polymerase ECF-subfamily sigma factor2098.0e-71

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4103-15555.53e-15

Sigma70_r41Sigma-70, region 4108-15754.94.1e-15

Sigma70_r21Sigma-70 region 220-8033.91.8e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053136376.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 6177.2e-80
WP_063482958.1 SigE family RNA polymerase sigma factor [Streptomyces ambofa... 6161.0e-79
WP_220672133.1 SigE family RNA polymerase sigma factor [Streptomyces geysir... 6046.3e-78
WP_019329161.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 6021.2e-77
WP_223780460.1 SigE family RNA polymerase sigma factor [Streptomyces sp. A1... 6021.2e-77
WP_127441092.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 6002.3e-77
OSC64545.1 SigE family RNA polymerase sigma factor, partial [Streptomyces sp... 5992.6e-77
WP_043380475.1 SigE family RNA polymerase sigma factor [Streptomyces mutabi... 6002.8e-77
WP_046250788.1 SigE family RNA polymerase sigma factor [Streptomyces sp. MB... 5993.5e-77
WP_100047517.1 SigE family RNA polymerase sigma factor [Streptomyces sp. Al... 5993.7e-77

PSORT result

LocalizationCertaintyPSORT said
Not Clear