-- | --

IDSAM23877_4926 TypeCDS
From5221039 nt length786
To5221824 aa length261
Gene pI10.17
DefinitionRNA polymerase sigma factor SigE M.W (Da) 28633
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_3117 putative RNA polymerase ECF-subfamily sigma factor3911.0e-140
coelSCO5147 putative ECF-subfamily sigma factor4301.0e-155
sgrSGR_2378 putative RNA polymerase ECF-subfamily sigma factor3747.0e-134

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 280-14573.76.7e-21

Sigma70_r4_21Sigma-70, region 4178-22960.67.6e-17

Sigma70_r41Sigma-70, region 4182-23148.63.7e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
AKZ57971.1 RNA polymerase sigma factor SigE [Streptomyces ambofaciens ATCC 2... 13600.0e+00
WP_217683977.1 MULTISPECIES: RNA polymerase sigma factor SigE [unclassified... 13130.0e+00
WP_203613898.1 RNA polymerase sigma factor SigE [Streptomyces rochei] 13090.0e+00
WP_202492533.1 MULTISPECIES: RNA polymerase sigma factor SigE [Streptomyces... 12945.5e-180
WP_201280918.1 RNA polymerase sigma factor SigE [Streptomyces tendae] 12911.4e-179
PPS74108.1 ECF RNA polymerase sigma factor SigE [Streptomyces sp. MH60] 12874.7e-179
WP_202559717.1 RNA polymerase sigma factor SigE [Streptomyces sp. SID5914] 12875.4e-179
WP_202546002.1 RNA polymerase sigma factor SigE [Streptomyces sp. SID5606] 12772.0e-177
WP_202558710.1 RNA polymerase sigma factor SigE [Streptomyces sp. SID5789] 12762.5e-177
WP_223179581.1 RNA polymerase sigma factor SigE [Streptomyces sp. TRM S81-3... 12721.0e-176

PSORT result

LocalizationCertaintyPSORT said
Not Clear