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IDSAM23877_5361 TypeCDS
From5697022 nt length843
To5697864 aa length280
GenewhiG pI5.48
DefinitionRNA polymerase sigma factor WhiG M.W (Da) 30941
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_2630 putative RNA polymerase sigma factor5330.0e+00
coelSCO5621 RNA polymerase sigma factor WhiG5530.0e+00
sgrSGR_1866 putative RNA polymerase sigma factor WhiG5110.0e+00

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4224-27368.42.6e-19

Sigma70_r21Sigma-70 region 250-12257.11e-15

Sigma70_r4_21Sigma-70, region 4218-26141.95.4e-11

Sigma70_r31Sigma-70 region 3130-21034.21.8e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053137727.1 RNA polymerase sigma factor WhiG [Streptomyces ambofaciens] ... 12524.5e-173
WP_073731573.1 RNA polymerase sigma factor WhiG [Streptomyces sp. CB02414] ... 12431.0e-171
WP_055421734.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12386.8e-171
WP_121749405.1 RNA polymerase sigma factor WhiG [Streptomyces sp. E2N166] 12334.4e-170
WP_122615159.1 MULTISPECIES: RNA polymerase sigma factor WhiG [unclassified... 12334.6e-170
WP_003973389.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12324.9e-170
WP_029394084.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12326.3e-170
WP_210960344.1 RNA polymerase sigma factor WhiG [Streptomyces sp. b94] >lcl... 12316.9e-170
WP_061442316.1 MULTISPECIES: RNA polymerase sigma factor WhiG [Streptomyces... 12317.3e-170
WP_030188650.1 RNA polymerase sigma factor WhiG [Streptomyces violaceorubid... 12318.8e-170

PSORT result

LocalizationCertaintyPSORT said
Not Clear