-- | --

IDSAM23877_6227 TypeCDS
From6689349 nt length795
To6690143 aa length264
GenesigF pI5.45
DefinitionRNA polymerase sigma factor SigF M.W (Da) 29750
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
avmSAVERM_1873 putative RNA polymerase sigma factor4362.0e-157
coelSCO6520 putative RNA polymerase sigma factor4806.0e-175
sgrSGR_6446 putative RNA polymerase sigma factor3323.0e-116

*avm, Streptomyces avermitilis; coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4208-25674.04.4e-21

Sigma70_r21Sigma-70 region 241-10967.56e-19

Sigma70_r4_21Sigma-70, region 4201-24947.68.4e-13

Sigma70_r31Sigma-70 region 3121-17336.24.4e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053139635.1 RNA polymerase sigma factor SigF [Streptomyces ambofaciens] ... 11888.3e-164
WP_063483583.1 RNA polymerase sigma factor SigF [Streptomyces ambofaciens] ... 11826.4e-163
WP_220672224.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11141.7e-152
WP_031017932.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 11123.1e-152
WP_210953453.1 RNA polymerase sigma factor SigF [Streptomyces sp. RT42] >lc... 11099.7e-152
WP_055419322.1 RNA polymerase sigma factor SigF [Streptomyces pactum] >gb 11081.2e-151
WP_019328673.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11081.3e-151
WP_217145033.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 11053.4e-151
WP_125537354.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 11053.7e-151
WP_136236521.1 RNA polymerase sigma factor SigF [Streptomyces sp. SS52] >gb... 11053.8e-151

PSORT result

LocalizationCertaintyPSORT said
Not Clear