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IDSAM23877_6642 TypeCDS
From7180371 nt length1017
To7181387 aa length338
GenehrdC pI7.10
DefinitionRNA polymerase principal sigma factor HrdC M.W (Da) 37518
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0895 RNA polymerase principal sigma factor HrdC.5570.0e+00

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3184-25772.42.1e-20

Sigma70_r21Sigma-70 region 2105-17469.61.3e-19

Sigma70_r41Sigma-70, region 4275-32656.61.2e-15

Sigma70_r1_21Sigma-70 factor, region 1.236-6844.51e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053140507.1 sigma-70 family RNA polymerase sigma factor [Streptomyces am... 15740.0e+00
WP_219181506.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15220.0e+00
WP_073728506.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15150.0e+00
OSC54334.1 RNA polymerase subunit sigma [Streptomyces sp. 4F] >gb 15120.0e+00
WP_100047692.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15110.0e+00
WP_217248965.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15050.0e+00
WP_127444872.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15040.0e+00
WP_210962935.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15030.0e+00
WP_121745598.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15020.0e+00
WP_220671812.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ge... 15020.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear