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IDSAM23877_6930 TypeCDS
From7475339 nt length846
To7474494 aa length281
GenehasR pI4.79
DefinitionRNA polymerase sigma factor M.W (Da) 31681
Note AseI frg.
SignalP v.4.0Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0600 sig8 RNA polymerase sigma factor sig85350.0e+00

*coel, Streptomyces coelicolor A3(2);

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4227-27563.01.2e-17

Sigma70_r21Sigma-70 region 258-12859.81.4e-16

Sigma70_r31Sigma-70 region 3138-20150.91.1e-13

Sigma70_r4_21Sigma-70, region 4226-27336.03.8e-09

KORA1TrfB plasmid transcriptional repressor219-27328.51.2e-06

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_053141164.1 RNA polymerase sigma factor SigF [Streptomyces ambofaciens] ... 13970.0e+00
WP_121745371.1 RNA polymerase sigma factor SigF [Streptomyces sp. E2N166] 13640.0e+00
WP_053142075.1 RNA polymerase sigma factor SigF [Streptomyces ambofaciens] ... 13570.0e+00
WP_055421363.1 RNA polymerase sigma factor SigF [Streptomyces pactum] >gb 13540.0e+00
WP_210958335.1 RNA polymerase sigma factor SigF [Streptomyces sp. b94] >lcl... 13450.0e+00
WP_100047030.1 RNA polymerase sigma factor SigF [Streptomyces sp. Alain-F2R... 13430.0e+00
WP_043384055.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13410.0e+00
PAK23982.1 B/F/G family RNA polymerase sigma-70 factor [Streptomyces sp. ala... 13380.0e+00
WP_191885225.1 RNA polymerase sigma factor SigF [Streptomyces mutabilis] >d... 13360.0e+00
WP_217251237.1 SigB/SigF/SigG family RNA polymerase sigma factor [Streptomy... 13340.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear