SAM23877

ID SAM23877_7010 Type CDS
From 7553463 nt length 204
To 7553666 aa length 67
Gene cspD pI 4.45
Definition cold shock protein-like protein M.W (Da) 7178
Note Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism%3B PubMedId : 1622933%2C 21160192%2C 2186030%2C 9868784%3B Product type f : factor AseI frg.
SignalP v.4.0 Non-secretory protein | plot Category

Orthologs (if any)

Bacteria*	Reciprocally best hit to	Score	E-value
coel	SCO0527 scoF cold shock protein	139	5.0e-46
sgr	SGR_462 putative cold shock protein	131	4.0e-43

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350;

Pfam search result

	Model	No.	Description	Position (aa)	Score	E-value
	CSD	1	'Cold-shock' DNA-binding domain	3-66	105.0	1.2e-30

BLAST search result (top 10 hits)

ID	Description	Score	E-value
WP_003978336.1	MULTISPECIES: cold-shock protein [Streptomyces] >sp	349	3.3e-42
WP_028964611.1	MULTISPECIES: cold-shock protein [Streptomyces] >lcl	344	1.7e-41
WP_019330262.1	MULTISPECIES: cold-shock protein [Streptomyces] >lcl	344	2.0e-41
WP_030422747.1	MULTISPECIES: cold-shock protein [unclassified Streptomyces]...	343	2.3e-41
WP_129291893.1	cold-shock protein [Streptomyces lydicus]	342	3.1e-41
GGR62349.1	hypothetical protein GCM10010251_93910 [Streptomyces aurantiogri...	342	6.5e-41
GGR63760.1	hypothetical protein GCM10010251_95530 [Streptomyces aurantiogri...	342	6.6e-41
WP_059190954.1	MULTISPECIES: cold-shock protein [Streptomyces] >gb	340	7.0e-41
WP_189877651.1	cold-shock protein [Streptomyces viridiviolaceus] >dbj	340	8.2e-41
WP_093655093.1	cold-shock protein [Streptomyces wuyuanensis] >emb	339	9.1e-41

PSORT result

Localization	Certainty	PSORT said
Not Clear

ID	SAM23877_7010	Type	CDS
From	7553463	nt length	204
To	7553666	aa length	67
Gene	cspD	pI	4.45
Definition	cold shock protein-like protein	M.W (Da)	7178
Note	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism%3B PubMedId : 1622933%2C 21160192%2C 2186030%2C 9868784%3B Product type f : factor	AseI frg.
SignalP v.4.0	Non-secretory protein \| plot	Category