| ID | SAVERM_1138
| Type | CDS
|
| From | 1426937
| nt length | 711
|
| To | 1426227
| aa length | 236
|
| Gene | rnhA
| pI | 8.32
|
| Definition | putative ribonuclease H
| M.W (Da) | 24882
|
| Note | PF00075: RNase H
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO7284 putative ribonuclease H | 352 | 2.0e-125
|
| sgr | SGR_6591 putative ribonuclease H | 261 | 5.0e-89
|
| sam | SAM23877_0929 Ribonuclease HI | 361 | 6.0e-129
|
| scab | SCAB85661 putative ribonuclease H | 301 | 2.0e-105
|
| sace | SACE_6195 ribonuclease HI | 85 | 9.0e-22
|
| nfar | nfa56240 rnhA RNase HI | 104 | 7.8e-24
|
| ecoli | gi|16128201 ribonuclease H [Escherichia coli K12] | 82 | 2.4e-17
|
| paer | PA1815 [gene=rnhA] [prot=ribonuclease H] [comment=PA1815] | 102 | 3.1e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_H | 1 | RNase H | 7-149 | 108.3 | 3.3e-31
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1263 | Seems to have no N-terminal signal seq.
|