-- | --

IDSAVERM_1195 TypeCDS
From1486716 nt length1191
To1485526 aa length396
Genesig16 pI6.39
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)43549
NotePF04542: Sigma-70 region 2 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
sgrSGR_2792 putative RNA polymerase ECF-subfamily sigma factor3082.0e-102
saceSACE_5770 putative RNA polymerase, sigma-24 subunit, ECF subfamily5032.0e-179
nfarnfa43130 sigma factor3841.0e-107
paerPA1351 [gene=PA1351] [prot=probable sigma-70 factor, ECF subfamily] [comment=PA1351]3816.8e-107

*sgr, Streptomyces griseus IFO13350; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 29-7446.22.7e-12

Sigma70_r4_21Sigma-70, region 4106-15733.72e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_151478695.1 RNA polymerase sigma factor [Streptomyces albicerus] 14740.0e+00
WP_095856460.1 RNA polymerase sigma factor [Streptomyces sp. Ag82_O1-15] >g... 14510.0e+00
WP_143600482.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14460.0e+00
WP_060899053.1 MULTISPECIES: RNA polymerase sigma factor [unclassified Stre... 14460.0e+00
WP_143633891.1 RNA polymerase sigma factor [Streptomyces sp. IB201691-2A2] ... 14460.0e+00
WP_097283253.1 RNA polymerase sigma factor [Streptomyces sp. OK228] >emb 14430.0e+00
WP_097226767.1 RNA polymerase sigma factor [Streptomyces sp. OV198] >emb 14430.0e+00
WP_217566922.1 RNA polymerase sigma factor [Streptomyces sp. GbtcB7] 14300.0e+00
WP_190228387.1 sigma-70 family RNA polymerase sigma factor [Streptomyces um... 14280.0e+00
WP_190172085.1 RNA polymerase sigma factor [Streptomyces mirabilis] >dbj 14280.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0739 Seems to have no N-terminal signal seq.