| ID | SAVERM_1247
| Type | CDS
|
| From | 1546700
| nt length | 774
|
| To | 1547473
| aa length | 257
|
| Gene | cpdA
| pI | 5.82
|
| Definition | putative cyclic nucleotide phosphodiesterase
| M.W (Da) | 27128
|
| Note | PF00149: Calcineurin-like phosphoesterase
| AseI frg. | U
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of nucleotides & nucleic acids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| sgr | SGR_5609 putative cyclic nucleotide phosphodiesterase | 266 | 1.0e-90
|
| sam | SAM23877_0403 3', 5'-cyclic adenosine monophosphate phosphodiesterase CpdA | 87 | 4.0e-21
|
| sace | SACE_0382 cyclic nucleotide phosphodiesterase | 260 | 3.0e-88
|
| nfar | nfa6820 phosphodiesterase | 116 | 1.7e-27
|
| mtub | gi|15607945 hypothetical protein Rv0805 [Mycobacterium tuberculosis H37Rv] | 84 | 7.2e-18
|
| cglu | gi|19552390 COG0420:DNA repair exonuclease [Corynebacterium glutamicum] | 33 | 1.3e-02
|
| ecoli | gi|16130928 cyclic 3',5'-adenosine monophosphate phosphodiesterase [Escherichia coli K12] | 89 | 1.7e-19
|
| paer | PA4969 [gene=PA4969] [prot=conserved hypothetical protein] [comment=PA4969] | 95 | 3.2e-21
|
*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Metallophos | 1 | Calcineurin-like phosphoesterase | 2-190 | 58.9 | 9.1e-16
|
| Metallophos_2 | 1 | Calcineurin-like phosphoesterase superfamily domain | 2-201 | 30.4 | 3.6e-07
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0209 | Seems to have no N-terminal signal seq.
|