| ID | SAVERM_1274
| Type | CDS
|
| From | 1581753
| nt length | 804
|
| To | 1582556
| aa length | 267
|
| Gene | pvdS
| pI | 9.76
|
| Definition | putative regulatory protein
| M.W (Da) | 31414
|
| Note | PF03976: Domain of unknown function (DUF344)
| AseI frg. | P
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0166 putative regulator | 423 | 3.0e-152
|
| sgr | SGR_5796 conserved hypothetical protein | 293 | 3.0e-100
|
| sam | SAM23877_6994 putative RNA polymerase sigma foactor | 280 | 1.0e-94
|
| scab | SCAB4211 putative regulatory protein | 494 | 6.0e-180
|
| sace | SACE_2439 RNA polymerase sigma factor, putative | 381 | 6.0e-136
|
| nfar | nfa52170 hypothetical protein | 114 | 8.9e-27
|
| mtub | gi|15610368 POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN PVDS (PROBABLE RNA POLYMERASE SIGMA FACTOR) [Mycobacterium tuberculosis H37Rv] | 376 | 9.7e-106
|
| cglu | gi|19552143 COG2326:Uncharacterized BCR [Corynebacterium glutamicum] | 367 | 3.2e-103
|
| paer | PA2428 [gene=PA2428] [prot=hypothetical protein] [comment=PA2428] | 318 | 2.5e-88
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| PPK2 | 1 | Polyphosphate kinase 2 (PPK2) | 11-233 | 357.5 | 2.6e-107
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3138 | Seems to have no N-terminal signal seq.
|