| ID | SAVERM_1444
| Type | CDS
|
| From | 1778763
| nt length | 1143
|
| To | 1779905
| aa length | 380
|
| Gene | rsmC
| pI | 9.14
|
| Definition | putative ribosomal RNA small subunit methyltransferase
| M.W (Da) | 41277
|
| Note | PF05175: Methyltransferase small domain
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO1041 hypothetical protein | 597 | 0.0e+00
|
| sgr | SGR_6774 putative ribosomal RNA small subunit methyltransferase | 531 | 0.0e+00
|
| sam | SAM23877_1131 Ribosomal RNA large subunit methyltransferase G | 601 | 0.0e+00
|
| scab | SCAB82901 putative ribosomal RNA small subunit methyltransferase | 604 | 0.0e+00
|
| nfar | nfa48380 hypothetical protein | 168 | 6.3e-43
|
| cglu | gi|19551391 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 32 | 3.8e-02
|
| bsub | BG10727 ybxB, ybaA; similar to unknown proteins | 63 | 1.5e-11
|
| ecoli | gi|49176310 putative enzyme [Escherichia coli K12] | 300 | 8.1e-83
|
| paer | PA4617 [gene=PA4617] [prot=conserved hypothetical protein] [comment=PA4617] | 315 | 3.3e-87
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MTS | 1 | Methyltransferase small domain | 209-376 | 192.0 | 5.1e-57
|
| Methyltransf_25 | 1 | Methyltransferase domain | 241-340 | 45.1 | 1.1e-11
|
| Methyltransf_31 | 1 | Methyltransferase domain | 238-344 | 40.7 | 1.9e-10
|
| Methyltransf_11 | 1 | Methyltransferase domain | 242-343 | 33.2 | 5.6e-08
|
| PrmA | 1 | Ribosomal protein L11 methyltransferase (PrmA) | 235-311 | 24.7 | 1.2e-05
|
| Methyltransf_2 | 1 | O-methyltransferase | 230-345 | 24.5 | 1.3e-05
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2093 | Seems to have no N-terminal signal seq.
|