| ID | SAVERM_1650
| Type | CDS
|
| From | 2022191
| nt length | 2001
|
| To | 2020191
| aa length | 666
|
| Gene | hopA
| pI | 4.87
|
| Definition | squalene-hopene cyclase
| M.W (Da) | 73664
|
| Note | squalene/hopene gene cluster, shc, PF00432: Prenyltransferase and squalene oxidase repeat
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of lipids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6764 putative squalene-hopene cyclase | 1146 | 0.0e+00
|
| sgr | SGR_962 putative squalene-hopene cyclase | 1060 | 0.0e+00
|
| sam | SAM23877_6414 Squalene--hopene cyclase | 1104 | 0.0e+00
|
| scab | SCAB12951 squalene-hopene cyclase | 1109 | 0.0e+00
|
| sace | SACE_4327 squalene--hopene cyclase | 747 | 0.0e+00
|
| mtub | gi|15610513 POSSIBLE CYCLASE [Mycobacterium tuberculosis H37Rv] | 40 | 3.8e-04
|
| bsub | BG12679 sqhC; squalene-hopene cyclase | 303 | 2.1e-83
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SQHop_cyclase_C | 1 | Squalene-hopene cyclase C-terminal domain | 339-655 | 495.0 | 7.8e-149
|
| SQHop_cyclase_N | 1 | Squalene-hopene cyclase N-terminal domain | 44-328 | 435.0 | 1e-130
|
| Prenyltrans | 6 | Prenyltransferase and squalene oxidase repeat | 44-65, 95-130, 431-450, 498-526, 544-597, 604-621 | 99.5 | 5.7e-29
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2642 | Seems to have no N-terminal signal seq.
|